{ "_id": "6a3a523e6265ec60d620ee8e", "Package": "agriDQ", "Title": "Data Quality Checks and Statistical Assumption Testing for\nAgricultural Experiments", "Version": "0.1.3", "Authors@R": "person(\ngiven = \"Sadikul\",\nfamily = \"Islam\",\nemail = \"sadikul.islamiasri@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-2924-7122\")\n)", "Description": "Provides a comprehensive pipeline for data quality checks\nand statistical assumption diagnostics in agricultural\nexperimental data. Functions cover outlier detection using\nInterquartile Range (IQR) fence, Z-score, modified Z-score\n(Hampel identifier), Grubbs test and Dixon Q-test with\nconsensus flagging; missing data pattern analysis and mechanism\nclassification (Missing Completely At Random/Missing At\nRandom/Missing Not At Random (MCAR/MAR/MNAR)) via Little's\ntest; normality testing using Shapiro-Wilk, Anderson-Darling,\nKolmogorov-Smirnov, Lilliefors, Pearson chi-square and\nJarque-Bera tests; homogeneity of variance via Bartlett, Levene\nand Fligner-Killeen tests; independence of errors via\nDurbin-Watson, Breusch-Godfrey and Wald-Wolfowitz runs tests;\nexperimental design validation for Completely Randomised Design\n(CRD), Randomised Complete Block Design (RCBD), Latin Square\nDesign (LSD) and factorial designs; qualitative variable\nconsistency checks; and automated HyperText Markup Language\n(HTML) report generation. Designed to align with Findable,\nAccessible, Interoperable and Reusable (FAIR) data principles.\nMethods follow Gomez and Gomez (1984, ISBN:978-0471870920) and\nMontgomery (2017, ISBN:978-1119492443).", "License": "GPL (>= 3)", "Encoding": "UTF-8", "Language": "en-US", "LazyData": "true", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-23 09:27:21 UTC", "User": "root" }, "Author": "Sadikul Islam [aut, cre] (ORCID:\n)", "Maintainer": "Sadikul Islam ", "Config/pak/sysreqs": "cmake make libicu-dev libssl-dev", "Repository": "https://sadikulislamiasri-hub.r-universe.dev", "Date/Publication": "2026-04-21 19:42:01 UTC", "RemoteUrl": "https://github.com/cran/agriDQ", "RemoteRef": "HEAD", "RemoteSha": "eb751ad5c66b0c82091fbd929c56647af37e0290", "MD5sum": "8235d56a465854cfaa2ce63478d84e47", "_user": "sadikulislamiasri-hub", "_type": "src", "_file": "agriDQ_0.1.3.tar.gz", "_fileid": "2a5bdcdc43324e3cff4bd6be4345bfdba1d6564ca32bcf6c560dbb72a797e64e", "_filesize": 227405, "_sha256": "2a5bdcdc43324e3cff4bd6be4345bfdba1d6564ca32bcf6c560dbb72a797e64e", "_created": "2026-06-23T09:27:21.000Z", "_published": "2026-06-23T09:30:38.921Z", "_distro": "noble", "_jobs": [ { "job": 82921414418, "time": 141, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7816832579" }, { "job": 82921414453, "time": 145, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7816834385" }, { "job": 82921414397, "time": 138, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7816824612" }, { "job": 82921414387, "time": 164, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7816832300" }, { "job": 82920783069, "time": 195, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7816775468" }, { "job": 82921414402, "time": 119, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7816824633" }, { "job": 82921414507, "time": 107, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7816818259" }, { "job": 82921414525, "time": 111, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7816820322" }, { "job": 82921414499, "time": 83, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7816808647" } ], "_buildurl": "https://github.com/r-universe/sadikulislamiasri-hub/actions/runs/28016108203", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/agriDQ", "_commit": { "id": "eb751ad5c66b0c82091fbd929c56647af37e0290", "author": "Sadikul Islam ", "committer": "cran-robot ", "message": "version 0.1.3\n", "time": 1776800521 }, "_maintainer": { "name": "Sadikul Islam", "email": "sadikul.islamiasri@gmail.com", "login": "sadikulislamiasri-hub", "description": "", "uuid": 295794536, "orcid": "0000-0003-2924-7122" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "nortest", "role": "Imports" }, { "package": "car", "role": "Imports" }, { "package": "lmtest", "role": "Imports" }, { "package": "tseries", "role": "Imports" }, { "package": "stringdist", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "covr", "role": "Suggests" }, { "package": "MASS", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-17", "n": 1 } ], "_tags": [ { "name": "0.1.3", "date": "2026-04-21" } ], "_stars": 0, "_contributors": [ { "user": "sadikulislamiasri-hub", "count": 1, "uuid": 295794536 } ], "_userbio": { "uuid": 295794536, "type": "user", "name": "sadikulislamiasri-hub", "followers": 0 }, "_downloads": { "count": 504, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/agriDQ" }, "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/agriDQ.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "sadikulislamiasri-hub", "_cranurl": false, "_releases": [ { "version": "0.1.3", "date": "2026-04-21" } ], "_exports": [ "check_design", "check_homogeneity", "check_independence", "check_missing", "check_normality", "check_outliers", "check_outliers_mv", "check_qualitative", "classify_missing", "generate_dq_report", "run_dq_pipeline", "standardise_labels" ], "_datasets": [ { "name": "agri_trial", "title": "Simulated wheat variety trial dataset (RCBD)", "object": "agri_trial", "class": [ "data.frame" ], "fields": [ "plot_id", "block", "treatment", "variety", "yield", "plant_height", "tillers" ], "rows": 20, "table": true, "tojson": true } ], "_help": [ { "page": "agri_trial", "title": "Simulated wheat variety trial dataset (RCBD)", "topics": [ "agri_trial" ] }, { "page": "check_design", "title": "Validate experimental design structure and balance", "topics": [ "check_design" ] }, { "page": "check_homogeneity", "title": "Test homogeneity of variance across treatment groups", "topics": [ "check_homogeneity" ] }, { "page": "check_independence", "title": "Test independence of residuals / errors", "topics": [ "check_independence" ] }, { "page": "check_missing", "title": "Analyse missing data patterns and classify missingness mechanism", "topics": [ "check_missing" ] }, { "page": "check_normality", "title": "Comprehensive normality testing for agricultural experimental data", "topics": [ "check_normality" ] }, { "page": "check_outliers", "title": "Univariate outlier detection for agricultural experimental data", "topics": [ "check_outliers" ] }, { "page": "check_outliers_mv", "title": "Multivariate outlier detection using Mahalanobis distance", "topics": [ "check_outliers_mv" ] }, { "page": "check_qualitative", "title": "Check quality of categorical / qualitative variables", "topics": [ "check_qualitative" ] }, { "page": "classify_missing", "title": "Classify missingness mechanism per variable using logistic regression", "topics": [ "classify_missing" ] }, { "page": "generate_dq_report", "title": "Generate an automated HTML data quality report", "topics": [ "generate_dq_report" ] }, { "page": "print.agriDQ_result", "title": "Print an agriDQ_result object", "topics": [ "print.agriDQ_result" ] }, { "page": "run_dq_pipeline", "title": "Run the complete data quality pipeline", "topics": [ "run_dq_pipeline" ] }, { "page": "standardise_labels", "title": "Standardise categorical labels in a data frame", "topics": [ "standardise_labels" ] } ], "_readme": "https://github.com/cran/agriDQ/raw/HEAD/README.md", "_rundeps": [ "abind", "backports", "boot", "broom", "car", "carData", "cli", "colorspace", "cowplot", "cpp11", "curl", "Deriv", "doBy", "dplyr", "farver", "forecast", "Formula", "fracdiff", "generics", "ggplot2", "glue", "gtable", "isoband", "jsonlite", "labeling", "lattice", "lifecycle", "lme4", "lmtest", "magrittr", "MASS", "Matrix", "MatrixModels", "mgcv", "microbenchmark", "minqa", "modelr", "nlme", "nloptr", "nnet", "nortest", "numDeriv", "pbkrtest", "pillar", "pkgconfig", "purrr", "quadprog", "quantmod", "quantreg", "R6", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "reformulas", "rlang", "S7", "scales", "SparseM", "stringdist", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "timeDate", "tseries", "TTR", "urca", "utf8", "vctrs", "viridisLite", "withr", "xts", "zoo" ], "_score": 1.6989700043360187, "_indexed": true, "_nocasepkg": "agridq", "_universes": [ "sadikulislamiasri-hub" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.3", "date": "2026-06-23T09:29:42.000Z", "distro": "noble", "commit": "eb751ad5c66b0c82091fbd929c56647af37e0290", "fileid": "bc7e1e92f6129e78cfb2892d3408d121496a3d73ba98503a771c0f8910b85bd1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sadikulislamiasri-hub/actions/runs/28016108203" }, { "r": "4.6.0", "os": "linux", "version": "0.1.3", "date": "2026-06-23T09:29:46.000Z", "distro": "noble", "commit": "eb751ad5c66b0c82091fbd929c56647af37e0290", "fileid": "90e7794e48efa01a595a98b12b52867600ce0a56b8b3061e9e152ab6bc018e6e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sadikulislamiasri-hub/actions/runs/28016108203" }, { "r": "4.5.3", "os": "mac", "version": "0.1.3", "date": "2026-06-23T09:29:27.000Z", "commit": "eb751ad5c66b0c82091fbd929c56647af37e0290", "fileid": "1456b0f6f51e4edebac56779fe4d736bb8fb1a68096c6f95a45bb1d59df519ac", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sadikulislamiasri-hub/actions/runs/28016108203" }, { "r": "4.6.0", "os": "mac", "version": "0.1.3", "date": "2026-06-23T09:29:41.000Z", "commit": "eb751ad5c66b0c82091fbd929c56647af37e0290", "fileid": "1b7eee3c9400f1b892bdebaa1ed8411f3174a2cc6fc241ec9d05208e051da869", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sadikulislamiasri-hub/actions/runs/28016108203" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.3", "date": "2026-06-23T09:29:38.000Z", "commit": "eb751ad5c66b0c82091fbd929c56647af37e0290", "fileid": "4e3e30fa579ce4a93779b0c556759a57e376c3baa69c581fbdf607d263e1a5f5", "status": "success", "buildurl": "https://github.com/r-universe/sadikulislamiasri-hub/actions/runs/28016108203" }, { "r": "4.7.0", "os": "win", "version": "0.1.3", "date": "2026-06-23T09:28:59.000Z", "commit": "eb751ad5c66b0c82091fbd929c56647af37e0290", "fileid": "bebff40b5b91b98846eba2f7d36c168886010fe8f5547b06829001fcd2c84913", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sadikulislamiasri-hub/actions/runs/28016108203" }, { "r": "4.5.3", "os": "win", "version": "0.1.3", "date": "2026-06-23T09:29:08.000Z", "commit": "eb751ad5c66b0c82091fbd929c56647af37e0290", "fileid": "96b992d3ce44fe7fca1e8b345572590ead39ab1f898ef305f89eadd799aeeb57", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sadikulislamiasri-hub/actions/runs/28016108203" }, { "r": "4.6.0", "os": "win", "version": "0.1.3", "date": "2026-06-23T09:28:36.000Z", "commit": "eb751ad5c66b0c82091fbd929c56647af37e0290", "fileid": "424035ba0bdaacaf635d26f0eeb4224170ebcfd24a8b43fdb4a725ba97754d92", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sadikulislamiasri-hub/actions/runs/28016108203" } ] }